SNP Profiles matching EET 399 [ECU]

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_Input profile	CT	CC	AC	GT	CT	CC	GG	GG	CC	AG	GG	AA	CC	AG
1._EET_399_[ECU]	_	_	AC	GT	CT	CC	GG	GG	CC	_	_	AA	_	AG
2._EET_399_[ECU]	_	_	AC	GT	CT	CC	GG	GG	CC	_	_	AA	_	AG
3._UF_12	_	_	AC	GT	CT	CC	GG	GG	CC	_	_	AA	_	AG
4._RUQ_745	_	_	AC	GT	CT	CC	GG	GG	CC	_	_	AA	_	AG
5._EET_399_[ECU]	_	_	AC	GT	_	CC	GG	GG	CC	_	_	AA	_	AG
6._EET_399_[ECU]	_	_	AC	GT	_	CC	GG	GG	CC	_	_	AA	_	AG
7._EET_399_[ECU]	_	_	AC	GT	CT	CC	GG	GG	CC	_	_	AA	_	AG
8._EET_399_[ECU]	_	_	AC	GT	CT	CC	GG	GG	CC	_	_	AA	_	AG
9._GC-04-047-3-11	CT	CC	AC	GT	CT	CC	GG	GG	CC	AG	GG	AA	CG	AG
10._GC-04-047-3-11	CT	CC	AC	GT	CT	CC	GG	GG	CC	AG	GG	AA	CG	AG
11._GC-04-047-3-11	CT	CC	AC	GT	CT	CC	GG	GG	CC	AG	GG	AA	CG	AG
12._GC-04-047-3-11	CT	CC	AC	GT	CT	CC	GG	GG	CC	AG	GG	AA	CG	AG
13._GC-04-047-3-11	CT	CC	AC	GT	CT	CC	GG	GG	CC	AG	GG	AA	CG	AG
14._GC-04-047-3-11	CT	CC	AC	GT	_	CC	GG	GG	CC	AG	GG	AA	CG	AG
15._GC-04-047-3-11	CT	CC	AC	GT	_	CC	GG	GG	CC	AG	GG	AA	CG	AG
16._EET_400_[ECU]	_	_	AC	GT	CT	CC	_	AG	CC	_	_	AA	_	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	CT	GG	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
1._EET_399_[ECU]	AC	CT	GG	GG	AC	_	CT	_	GT	_	_	_	CG	_
2._EET_399_[ECU]	AC	CT	GG	GG	AC	_	CT	_	GT	_	_	_	CG	_
3._UF_12	AC	CT	GG	GG	AC	_	CT	_	GT	_	_	_	CG	_
4._RUQ_745	AC	CT	GG	GG	AC	_	CT	_	GT	_	_	_	CG	_
5._EET_399_[ECU]	AC	CT	GG	GG	AC	_	CT	_	GT	_	_	_	CG	_
6._EET_399_[ECU]	AC	CT	GG	GG	AC	_	CT	_	GT	_	_	_	CG	_
7._EET_399_[ECU]	AC	CT	_	GG	AC	_	CT	_	GT	_	_	_	CG	_
8._EET_399_[ECU]	_	CT	GG	GG	AC	_	CT	_	GT	_	_	_	CG	_
9._GC-04-047-3-11	AC	CT	GG	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
10._GC-04-047-3-11	AC	CT	GG	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
11._GC-04-047-3-11	AC	CT	GG	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
12._GC-04-047-3-11	_	CT	GG	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
13._GC-04-047-3-11	AC	CT	_	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
14._GC-04-047-3-11	AC	CT	GG	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
15._GC-04-047-3-11	AC	CT	GG	GG	AC	CC	CT	CT	GT	AG	TT	AC	CG	GG
16._EET_400_[ECU]	AC	CT	GG	GG	AC	_	CT	_	GG	_	_	_	CG	_

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	TT	AA	CC	CC	GG	GG	TT	GG	CT	CC	TT	CC	AG	X_X
1._EET_399_[ECU]	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
2._EET_399_[ECU]	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
3._UF_12	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
4._RUQ_745	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
5._EET_399_[ECU]	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
6._EET_399_[ECU]	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
7._EET_399_[ECU]	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
8._EET_399_[ECU]	CT	AA	_	CC	_	_	_	GG	_	_	TT	CC	AG	X_X
9._GC-04-047-3-11	CT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
10._GC-04-047-3-11	CT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
11._GC-04-047-3-11	CT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
12._GC-04-047-3-11	CT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
13._GC-04-047-3-11	CT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
14._GC-04-047-3-11	CT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
15._GC-04-047-3-11	CT	AA	CC	CC	GG	GG	TT	GG	TT	CC	TT	CC	AG	X_X
16._EET_400_[ECU]	CT	AA	_	CC	_	_	_	GT	_	_	TT	CC	AG	X_X

Input profile: EET_399_[ECU] RUQ_745

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._EET_399_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 6 > FP

Dapeng Zhang, 2016

2._EET_399_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 2

Dapeng Zhang, 2016

3._UF_12

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5221 5

Dapeng Zhang, 2016

4._EET_399_[ECU] RUQ_745

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

5._EET_399_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 8 > FP

Dapeng Zhang, 2016

6._EET_399_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 5 > FP

Dapeng Zhang, 2016

7._EET_399_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 3 > FP

Dapeng Zhang, 2016

8._EET_399_[ECU]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4311 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._EET_399_[ECU] GC-04-047-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

10._EET_399_[ECU] GC-04-047-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2

11._EET_399_[ECU] GC-04-047-3-11

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

12._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

14._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP1

15._EET_399_[ECU] GC-04-047-3-11

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

16._EET_400_[ECU]

91.3 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP329
11	TcSNP364	12	TcSNP372	13	TcSNP448	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1253	37	TcSNP1309	38	TcSNP1439	39	TcSNP1442	40	TcSNP1458
41	TcSNP1484